Science & Nature Archive

Monday, June 17, 2013

Leaving Comments on Other Sites - Birds as Dinosaurs and Fossil Evidence for Evolution

Archaeopteryx - Berlin SpecimenOne of my habits when I'm getting ready to write a blog entry is to do a quick Google search to see if anyone's written anything along the same lines, before. If I find something that's very similar to what I was intending on doing, then there's no reason for me to repeat what's already been done. Sometimes I'll change direction on what I was going to write, and sometimes I'll just table the concept entirely.

Well, in the course of googling for the entry, Birds Are Dinosaurs, I came across a blog, Across the Fruited Plain, which had an entry, Are Dinosaurs Alive Today As Birds?: Refuting Archaeopteryx as "Evidence" for Evolution. Reading through the comments, I followed a link to another of his blog entries, Refuting Fossil "Evidence" for Evolution: The Data is NOT in the Strata. Despite it not being a particularly active blog, I caught a case of SIWOTI syndrome and couldn't resist commenting. Unfortunately, those comments are held up in moderation. My guess is because the owner of the blog just isn't very active in maintaining it (he's only posted three new entries so far this year). But, the only cure for SIWOTI syndrome is to see your comments get published somewhere, so I'm putting them here. So, if you just happen to be a regular reader of Across the Fruited Plain, here are some comments relevant to posts on that site.

First, here is my comment to his article, Are Dinosaurs Alive Today As Birds?: Refuting Archaeopteryx as "Evidence" for Evolution.

I tried leaving a comment to this article a couple days ago, but it didn't go through. If it's simply held up in moderation, then I apologize for being redundant.

I have a question for you, but first some background. Ignoring evolution, most people agree that organisms can be grouped into nested hierarchies. For example, there are prokaryotes and eukaryotes, with animals being one group of eukaryote, and then vertebrates as one type of animal, and mammals as one type of vertebrate, etc, etc. So, for example, in the group we call mammals, there are animals as diverse as whales, bats, platypuses, dogs, elephants, people, etc. These are all very different animals, but share common traits that are unique to mammals, so they all get grouped as mammals. Personally, I think that evolution is the best explanation for these nested hierarchies, but maybe that's just the way that a god/gods (depending on your religion) liked to create things.

So, if you look at say, a chicken, a deinonychus, and an ornithischian dinosaur like a stegosaurus, it seems that the chicken and deinonychus have much more in common than either does with the stegosaurus. They're bipedal, have feathers, hollow bones, an air sac respiratory system, etc. And if you pick a bird like archaeopteryx, then it has even more in common with the deinonychus, right down to the sickle claw.

So my question is, ignoring evolution, would you at least classify birds as a type of dinosaur?

Next, here is my comment to his article, Refuting Fossil "Evidence" for Evolution: The Data is NOT in the Strata.

I know this is an old article, but I couldn't help commenting on it. Here are some responses to statements you made, grouped by the headings you used.

Lack of Transitional Forms Disprove Fossil Evidence for Evolution

First of all, why would you expect there to be countless fossils of every evolutionary transition? For example, the modern phylum of platyhelminthes, or flatworms, consists of thousands of species, yet there's scant fossil evidence of these organisms. If living organisms are absent from the fossil record, why would you expect all extinct organisms to be present? Fossilization is a rare event, and it's even rarer still for fossils to be exposed in a location where humans can find them.

How can you claim there are not transitional forms? What about archaeopteryx, tiktaalik roseae, pakicetus, rhodhocetus, dorudon, australopithecus? What would you expect of a transitional form?

Your understanding of punctuated equilibrium is very muddled. You've described what's known as saltationism, which simply couldn't work in sexually reproducing organisms - where would the 'hopeful monster' find a mate? Rather, punctuated equilibrium describes periods of relative stasis punctuated by periods of change rapid on a geological timescale - thousands of years rather than tens or hundreds of thousands. In reality, both punctuated equilibrium and gradualism are detectable in the fossil record.

Dating Methods

Ideally, the way dating works is to find layers of igneous rock above and below what you want to date. The igneous rock can be dated very accurately with radioisotopes (I know many young earth creationists don't trust atomic theory when it comes to radiometric dating, but this really is accurate). If no igneous layers are bracketing the sample you want to date, then you can rely on index fossils. These are species that were very abundant but only alive for only a very short time, and so only appear in limited stretches of the geologic column. In fact, these index fossils were recognized before radiometric dating, and used to establish relative ages of different layers. In modern times, there have been enough of these index species dated relative to igneous layers that you can be reasonably certain of the age of a sedimentary layer even if all you can find are the index fossils. But it's only these special index fossils that can be used to date layers, not any of the other fossils you happen to find in them.

Distinct Strata Identification

I'm not really sure what you're getting at, here. I don't know of anybody who would propose a date for a fossil based solely on finding it in limestone. As discussed above, you'd have to have at least index fossils, or ideally, igneous rock above and below the limestone layer you're looking at.

No Fossil is Conclusive Evidence for Evolution

Very true. A single fossil is not evidence. It's the pattern that emerges when you compare multiple fossils. For example, I cited a few examples above of whale evolution. Finding any one of them in isolation wouldn't be terribly strong evidence for evolution. But when you find multiple fossils like indohyus, pakicetus, ambulocetus, kutchicetus, rodhocetus, dorudon, and basilosaurus, it presents a much more cohesive picture.

The Fossil Evidence Supports the Biblical Worldwide Flood

First of all, most animal fossils are not of whole, complete animals. Most are fragmentary, the result of predation and scavenging. And the fossil record doesn't at all match what would be expected from a world wide flood. Organisms are found only in specific strata. Now, I know that some creationists like to explain this with 'hydraulic sorting', or positing that organisms got grouped by their ability to escape rising flood waters, but that doesn't match the reality of the fossil record. And that would still only be an average. Surely, if a worldwide flood had occured, some 'fast' animals would have died for various reasons before reaching higher ground. Yet there are no fossil rabbits in the cambrian, nor are there any ammonites that happened to make it to a higher strata (to pick just two examples). There are too many other problems with a global flood to list here, so I recommend googling "problems with a global flood talk origins" and reading that article.

Update 2015-02-23:My comment was finally approved on that site, and it spawned an entire debate. I also had a few follow-up posts on this site. For a summary of all the posts on this site dealing with this, take a look at Creationist Dishonesty and a Follow Up to Previous Entries.

Thursday, June 13, 2013

Birds Are Dinosaurs

Birds are dinosaurs. At this point, that's not a very ground breaking statement, but I'm surprised by the number of people I talk to who don't know that already, or who balk at the idea.

So, let's get the basics out of the way first. Birds are definitely descended from dinosaurs. There may have been some question of this a few decades ago, but this is pretty much a settled question now. Just take a look at this figure from Donald Prothero's book, Evolution: What the Fossils Say and Why It Matters.

Non-avian Dinosaur & Bird Homology

Here's another similar diagram from Peter Wellnhofer's Archaeopteryx: The Icon of Evolution.

Comparison of Bambiraptor, Archaeopteryx, and a Modern Chicken

Both diagrams very clearly show just how similar early birds like archaeopteryx were to their theropod cousins. Here's another diagram I like from Wikipedia. It compares the hands of a deinonychus and an archaeopteryx. If you were just shown flash cards of one these at a time without the other to compare to, would you be able to tell which was which?

Deinonychus vs. Archaeopteryx Hand Comparison

And here's one more picture, also from Wikipedia, showing where birds fit into the dinosaur family tree. They're nestled right in among the theropods, in the Saurischian branch of dinosaurs.

Dinosaur Family Tree

So, that much, at least, seems to be settled. But many people still seem to have a problem with calling birds dinosaurs. For example, go read this posting on Yahoo! Answers, Are birds considered dinosaurs? (one of the answers there even linked to this website). Most of the answers there fell into the form of, birds are descended from dinosaurs, but not dinosaurs themselves.

Now, on one hand, I can appreciate this line of reasoning. After all, we are evolved from lobe-finned fish, and while I suppose that you could think of us as just very specialized fish, I don't think anybody but a cladist would actually call us fish.

So, the question becomes, are birds dinosaurs, or have they changed so much that they should no longer be considered dinosaurs? Or in technical terms, should dinosaurs be a monophyletic or paraphyletic term?

To answer this, let's leave dinosaurs behind for just a bit. Take a look at the pictures below, none of which are dinosaurs. (Click on any picture to go to the Wikimedia Commons source. Note that all have been touched up in some way, some more than others.)

Kangaroo Skeleton Horse Skeleton Baleen Whale Skeleton Dolphin Skeleton Fruit Bat Skeleton

That is a whole lot of variation. The first animal hops. The next walks on only one toe per foot, on a highly modified toenail only. After that is an animal that swims in the ocean and eats by using its mouth as a strainer. Next is another ocean dweller, but one that 'sees' through sound waves. And last, and perhaps most relevant to this discussion, is an animal that flies. Despite all this variation, these animals all share some common traits. For example, they all breathe air (even the ones that live in the ocean), and they all feed their offspring milk from a special organ in the females. So, these various animals all get grouped together as mammals.

Now, let's get back to dinosaurs. Here are a few more skeletons to compare. (Clicking on any of them will take you to the original source - some of these are copyrighted.)

Emu Skeleton Gallimumus Skeleton Eagle Skeleton Stegosaurus Skeleton (Outdated Reconstruction)

There's still a fair amount of variation here, but not as much as in the group of mammals above. There are three bipedal animals, one of which can fly. The real outlier is the stegosaurus in the bottom right (note that the image is an outdated reconstruction, but close enough for this discussion). Just to be clear, the two skeletons on the left are modern birds. The two skeletons on the right are non-avian dinosaurs.

So, considering how much variation there is among animals that are still all classified as mammals, and considering how much more similar the gallimimus above (top right) is to the emu and eagle than it is to the stegosaurus, I don't see how you can group the gallimimus and stegosaurus in one group, yet leave the birds out. I just don't see any reason to classify birds as anything but flying dinosaurs.

Friday, June 7, 2013

Where Would Newton Weigh a Newton?

Newton on a ScaleI got into a conversation about units the other day (yeah - some of my friends are as nerdy as me), and it got me to thinking about Newtons. They're named after the guy, but not based on him in any physical sense. But what is the physical relationship? Where would you have to go for Newton to weigh a Newton?

This is actually a pretty simple calculation. If you think back to your high school or college physics days, the force due to gravity is:

F = G*m1*m2/r^2

where G is the universal gravitational constant, m1 and m2 are the masses of the two objects attracting each other, and r is the distance between their centers of mass. G is known thanks to science, as are the masses and radii of various bodies in our solar system. That leaves just one more unknown - the mass of Sir Isaac Newton himself.

So just how big was Newton? To tell the truth, I doubt that anyone knows for sure. Doing a google search on "How much did Newton weigh" didn't yield anything concrete. But I did come across an interesting article on the blog, And Now You Know:

How tall was Isaac Newton? 5 feet 6 inches, perhaps shorter

So, the title of that article gives the answer in itself. Newton wasn't very tall by today's standards. In fact, he wasn't even very tall by the standards of his day. John Conduitt, who knew Newton personally and saw him on a regular basis (he was married to Newton's niece), described him as "he was short of a \middle/ stature & in \plump/ \in/ his later years inclining to be fat."

So assuming Newton was 5'-6" and on the 'plump' side, how much would he have weighed? Here's an interesting chart from the UK's NHS, Height/weight chart. For someone 5'-6", the middle range for 'overweight' is just over 12 stones (who actually weighs themselves in stones?). So, let's round that up to 12.5 stones, or 175 lbs.

Okay, so now we've got Newton's weight on Earth as 175 lbs, which is equivalent to 79.5 kg. With that in hand, let's go through one example calculation for Earth, just to double check that we're doing everything correctly.

F = G*m1*m2/r^2
F = (6.67e-11 m³/kg-s²) * (5.97e24 kg) * (79.5 kg) / (6,371,000 km)^2
F = 781.3 N

In normal units, that's 175.65 lbs - close enough to my original estimate once you account for rounding errors, so it looks like everything's being done correctly. But that means, on Earth, Newton would have weighed far more than a Newton. The moon's smaller. What about it? Well, once you go through the calculation for the Moon, it turns out to 29.06 N - still too much. Even the dwarf planet of Pluto has too strong of gravity. Below is a table showing various bodies in our solar system, and how much Newton would weigh on each one (I also included pounds for the people like me who don't have a good feel for Newtons). Just so you know, those last three bodies are moons of Saturn, and they're all more or less round.

Body Mass, kg Radius, m Newton's
Weight, N
Weight, lbs
Earth 5.97E+24 6,371,000 781.34 175.65
Moon 7.35E+22 1,737,100 129.28 29.06
Pluto 1.31E+22 1,153,000 52.12 11.72
Enceladus 1.08E+20 252,100 9.02 2.03
Mimas 3.75E+19 198,200 5.07 1.14
Janus 1.9E+18 89,500 1.26 0.28

So, you have to get down to something as small as Janus, which only has a diameter of about 180 km, before Newton would weigh roughly a Newton. That's not a lot of force.

Image Source: Photoshopped from and Wikimedia Commons

Thursday, May 23, 2013

Tuesday Boy Problem Solved by Simulation

Math PuzzleThe other day, I came across a logic/math problem I hadn't heard before, The Tuesday Birthday Problem. It goes like this:

I have two children, one of whom is a son born on a Tuesday. What is the probability that I have two boys?

This puzzle was apparently first presented at a convention for mathematicians, magicians and puzzle enthusiasts (yeah, that's a pretty specialized convention) by Gary Foshee. Immediately after giving the puzzle, he followed up with this.

The first thing you think is 'What has Tuesday got to do with it?' Well, it has everything to do with it.

I know my first inclination was to dismiss that extra fact. How could it have any effect on the probability of the sex of the other child. I first read this puzzle late at night when I was tired, so I didn't feel like putting too much thought into it. Instead, I just read the explanations of how that extra bit of information alters the odds. But I still wasn't ready to buy those explanations just yet. But rather than try to think through the explanation that night, I decided to tackle it from a different angle. Instead of trying to figure out the odds, I'd just program a simulation and see how it played out.

In fact, this is a very simple simulation. I didn't program it in the most efficient manner, but it got the job done. Here's what I did. I created a 4 x 10,000 element array. That is, 10,000 sets of kids, with four pieces of information to designate sex and birth day of the week for each kid (sex 1, day 1, sex 2, day 2). Then, I randomly assigned sex and birth day to each of the kids. Next, I created a couple variables that would be filled in in the next stage. First was a variable keeping track of the number of sets where at least one was a boy born on a Tuesday - that is, the number of sets where the father would have given his first statement. The other variable was the number of sets with a boy born on a Tuesday and another son - the sets fulfilling the second statement. With the array and variables in place, I went back and did some if statements to simulate the father's conditions, increasing the totals of those variables as appropriate. When that was done, I simple divided the number of sets with kids with a boy born on a Tuesday and another son by the number of sets with at least one boy born on a Tuesday.

After running this program a few times, I found a small problem. 10,000 sets wasn't enough. The fraction was varying by several percentage points each time I ran it. So, I added one more feature to allow the program to keep a running average every time it ran.

Oh, and just to be sure I was doing things properly, I added a similar set of calculations to calculate the probability for a simpler puzzle:

I have two children, one of whom is a son. What is the probability that I have two boys?

This is much easier to understand, so it was my control to make sure the algorithm was working properly.

Warning: Don't read on if you want to solve the problem on your own, first.

Well, guess what I found out. After running the simulation on 100,000,000 sets of kids, I got a probability of 0.4813391 for the Tuesday boy problem, and 0.3333046 for the simpler boy problem. Those are very close to the actual odds of 13/27 (0.481481481...) and 1/3 (0.33333333...). It's pretty counterintuitive, but I guess those eggheads know what they're talking about, after all.

Image Source: Wikimedia Commons

Anyone interested in checking this out for themselves can download my program below:

Thursday, September 27, 2012

Mars Curiosity Rover - Is It Worth the Price Tag?

An artist depicts the moment that NASA's Curiosity rover touches down onto the Martian surface.Here's a short article I got started on back when the Curiosity Rover first landed, but then kind of forgot about and let linger. But, it's still relevant, so I've decided to finish it off and post it.

Whenever there's any type of science project in the news that doesn't seem to have immediate practical applications, some people inevitably ask why the research is being done. And when the price tag seems high, then even more people pose the question and lament the 'waste' of money.

I've written on this subject a couple times before. In this entry, Knowledge for Knowledge's Sake, I made two points defending science. First, as the title of that post suggested, that knowledge in and of itself is enough of a reason for some of us. "In the same way that some people may find beauty in a painting, others can find beauty in a deeper understanding of the mysteries of our universe." The other point was more pragmatic, that we don't always know where research will lead, and that there may actually be practical applications that we can't anticipate right now. Do you think that Albert Michelson and Edward Morley had any idea that their experiments looking for aether were one link in the chain that would eventually led to the GPS in my iPhone? My other entry on this subject, Why Study the Higgs Boson?, was mostly linking to other people making the same points, but more eloquently than I could. For example, I quoted Steven Weinberg, in reference to 19th century experiments on electricity, "If these physicists had limited themselves to work of obvious practical importance, they would have been studying the behavior of steam boilers."

So, those same points hold for the Curiosity Rover. But what about the price? The mission cost on the order of $2.5 billion (that's the American billion, or $2.5 thousand million for those of you using the long scale). That's a lot of money. Is knowledge for knowledge's sake really worth that much?

Let's look at some comparisons. The national budget proposed for 2011 was $3.69 trillion. The defense portion of that was $738 billion. Social Security was about the same. Medicare was $498 billion. So the Curiosity Rover was only .07% of the national budget, .3% of the defense budget (same for Social Security), or .5% of the Medicare budget. We're talking about a miniscule part of the budget.

Here's another comparison. Avatar (the movie) grossed $2.78 billion. That single movie grossed more than the cost of the rover. The next highest grossing movie, Titanic, was just about there with $2.19 billion. And several movies over the past two years have grossed over $1 billion. So the cost of the latest Mars rover would be covered by just one or two blockbuster films.

So yes, I think the Curiosity Rover was worthwhile. Whether or not the knowledge it yields will ever lead to practical applications, its overall cost is tiny compared to everything else the nation spends money on. And the cost seems especially reasonable when you consider that people were willing to pay more to watch a movie about visiting another planet than what it cost to actually send a robot to explore another planet.

For some reason, I had this link in the draft copy I'd saved of this entry. Maybe I had some profound point I was going to make, but that I've now forgotten. Or maybe I was using it as an example of why I think planetary exploration is important:
Interstellar Potatoes

Image Source: NASA


Selling Out